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rs28337969 SNP Detail
Summary
  • ID
    rs28337969
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:89229186 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GCTACAGCCT GGTCTCTGAG CGGCTCCTCC CCTCTGGAGA
    CCCAGTAGCT TCGGTGAGCG TCCTGGGAAC GCTCGAGCGC TAGCGCCTGG GAACCGCACC
    R
    CCGGCACAGA CGACTCACGC CGGGTAGGGA GCCCGCAGGC ACTGAGCTGC AGCGTTCTGC
    ACCGCCGCCG GCCCCGCCCC CTCAGACCAC GCCTGCTCT                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss38236222 NES09582595 PERLEGEN MM_PANEL2 f SNP A G A A A A G A G A A G A
ss45711199 mCV23376949 ABI CRAMUS_MOUSE f SNP G G A
ss146947803 ENSMUSSNP3019570 ENSEMBL ENSEMBL_Sanger f SNP A
ss321204812 CHEV_4_88956858 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs28337969 SNP A G A A A A G G A G A A A G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38236222 NES09582595 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:89229186 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cdkn2b cyclin dependent kinase inhibitor 2B mRNA-UTR
Cpgi14441 CpG island 14441 within coordinates
Gm12610 predicted gene 12610 within coordinates
Rr376809 regulatory region 376809 1852 bp downstream
Rr398336 regulatory region 398336 4 bp upstream
Rr595183 regulatory region 595183 302 bp distal
Rr595184 regulatory region 595184 80 bp proximal
Rr595185 regulatory region 595185 225 bp proximal
Rr595186 regulatory region 595186 295 bp proximal
Tssr42412 transcription start site region 42412 10 bp downstream
Tssr42413 transcription start site region 42413 72 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory