rs28337967 SNP Detail

Summary

• ID
  rs28337967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89229387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCACAGA CGACTCACGC
  CGGGTAGGGA GCCCGCAGGC ACTGAGCTGC AGCGTTCTGC ACCGCCGCCG GCCCCGCCCC
  CTCAGACCAC GCCTGCTCTC TAACCCCTCC CCCACACTTG GTGACGTCAT GAGACAAATA
  GGCGGGGTGG GGTGGTATCT GAGAGTCGGA AGATCTTAGA CGCCTGCGCA GAACTTTAAG
  Y
  TTCCTAGTCT GGAACTTACC GTGGCCGGTT GGCTATTTTT GAAAAAGTTG TGCCTCTGCA
  CTCAGCAGGC GGAGCAGAGG TCTTTATTTA GCTCAGGCCT GCAGGTTTCG CTTTGGAGGC
  ATCAATCGCG CTTTTGCAAT TGACTGACTG AAAGAAAGCC TTTAGAGTGA AAAATTTCTA
  CTTTCTGAAG CTGTCTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38236220	NES09582597	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	T	C	C
ss146947810	ENSMUSSNP4029853	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28337967					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236220	NES09582597	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89229387 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	111 bp upstream
Cpgi14441	CpG island 14441	within coordinates
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	within coordinates
Rr595183	regulatory region 595183	503 bp distal
Rr595184	regulatory region 595184	within coordinates
Rr595185	regulatory region 595185	24 bp proximal
Rr595186	regulatory region 595186	94 bp proximal
Tssr42412	transcription start site region 42412	135 bp upstream
Tssr42413	transcription start site region 42413	125 bp upstream