rs28337966 SNP Detail

Summary

• ID
  rs28337966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89229480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTAAGCTT CCTAGTCTGG AACTTACCGT GGCCGGTTGG
  CTATTTTTGA AAAAGTTGTG CCTCTGCACT CAGCAGGCGG AGCAGAGGTC TTTATTTAGC
  Y
  CAGGCCTGCA GGTTTCGCTT TGGAGGCATC AATCGCGCTT TTGCAATTGA CTGACTGAAA
  GAAAGCCTTT AGAGTGAAAA ATTTCTACTT TCTGAAGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38236219	NES09582599	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	T	C		C	T		C
ss45605076	mCV23376947	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		C
ss146947817	ENSMUSSNP5797389	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss321204814	CHEV_4_88957152	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28337966					SNP	C	C	T	C	C	C	C	T	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236219	NES09582599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89229480 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	204 bp upstream
Cpgi14441	CpG island 14441	within coordinates
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	within coordinates
Rr595183	regulatory region 595183	596 bp distal
Rr595184	regulatory region 595184	70 bp distal
Rr595185	regulatory region 595185	within coordinates
Rr595186	regulatory region 595186	1 bp proximal
Tssr42412	transcription start site region 42412	228 bp upstream
Tssr42413	transcription start site region 42413	218 bp upstream