rs28337965 SNP Detail

Summary

• ID
  rs28337965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89229553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCGGAGC AGAGGTCTTT ATTTAGCTCA GGCCTGCAGG
  TTTCGCTTTG GAGGCATCAA TCGCGCTTTT GCAATTGACT GACTGAAAGA AAGCCTTTAG
  R
  GTGAAAAATT TCTACTTTCT GAAGCTGTCT GAAAGTTGTA ACATCTGTCA TGCAAGGCTA
  GTTCATCTCT AGGCGGTATT TCACAGTTAG CATTAGACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38236218	NES09582602	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	A	G		G	A		G
ss45632937	mCV23376679	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		G
ss146947822	ENSMUSSNP5347272	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss321204815	CHEV_4_88957225	CHEVERUD	SCREENING_POP	f	SNP													G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28337965					SNP	G	G	A	G	G	G	G	A	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236218	NES09582602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89229553 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	277 bp upstream
Cpgi14441	CpG island 14441	51 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	63 bp downstream
Rr595183	regulatory region 595183	669 bp distal
Rr595184	regulatory region 595184	143 bp distal
Rr595185	regulatory region 595185	within coordinates
Rr595186	regulatory region 595186	51 bp distal
Tssr42412	transcription start site region 42412	301 bp upstream
Tssr42413	transcription start site region 42413	291 bp upstream