rs28337962 SNP Detail

Summary

• ID
  rs28337962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89230066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT ATGCAGGAAT AATGAAACAA
  Y
  AACACTCGGG TGTGGTGCTG GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38236215	NES09582607	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T		C	T	C			T	T
ss45614463	mCV23376666	ABI	CRAMUS_MOUSE	f	SNP	T						T	C
ss63332970	NES17507777	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T		C	T	C		T	T	T	T
ss146947835	ENSMUSSNP3055105	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
ss321204818	CHEV_4_88957738	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28337962					SNP	T	T	C	T	C	T	T	C	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236215	NES09582607	PERLEGEN	MM_PANEL	f	SNP	C/T
ss63332970	NES17507777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89230066 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	790 bp upstream
Cpgi14441	CpG island 14441	564 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	576 bp downstream
Rr595183	regulatory region 595183	1182 bp distal
Rr595184	regulatory region 595184	656 bp distal
Rr595185	regulatory region 595185	392 bp distal
Rr595186	regulatory region 595186	564 bp distal
Rr595187	regulatory region 595187	1642 bp proximal
Tssr42412	transcription start site region 42412	814 bp upstream
Tssr42413	transcription start site region 42413	804 bp upstream