rs28337961 SNP Detail

Summary

• ID
  rs28337961
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89230069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTACTTGA GAGGTGAGTT
  CAAAGACAAT CAGTATATAA CTAACCAGGC CTCCTCCCAA AGCCCCTAAG GTCCAGATCC
  AAGTGTGTAC TGTGTATCTT AGTTTGCCCT CTTACTGGTT TAAACCCACC TCAGCAAGTA
  TTTGATTTTT AGTTATCATA TGTAATAAAG AGCATTTATG CAGGAATAAT GAAACAATAA
  M
  ACTCGGGTGT GGTGCTGGGC CTGTCATTAA ACAGGGTGAA CCTGTCATTA AAGCCCTCTC
  TGAACGTAAA GATCAAGTGC TGCCTGGCTC CCGAATCCTG CTAGGGGAGA CCAAGCGAAG
  GAACATACTG CTTTAAAGTT TTTAAATGTT ACAACTGTTG CTACAGCGAA ATAGGAAGAG
  AGGCACACAT TATGTCTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38236214	NES09582609	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C		C	C
ss63332967	NES17507778	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28337961					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236214	NES09582609	PERLEGEN	MM_PANEL	f	SNP	A/C
ss63332967	NES17507778	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89230069 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	793 bp upstream
Cpgi14441	CpG island 14441	567 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	579 bp downstream
Rr595183	regulatory region 595183	1185 bp distal
Rr595184	regulatory region 595184	659 bp distal
Rr595185	regulatory region 595185	395 bp distal
Rr595186	regulatory region 595186	567 bp distal
Rr595187	regulatory region 595187	1639 bp proximal
Tssr42412	transcription start site region 42412	817 bp upstream
Tssr42413	transcription start site region 42413	807 bp upstream