rs28337960 SNP Detail

Summary

• ID
  rs28337960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89230122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAAAGC CCCTAAGGTC
  CAGATCCAAG TGTGTACTGT GTATCTTAGT TTGCCCTCTT ACTGGTTTAA ACCCACCTCA
  GCAAGTATTT GATTTTTAGT TATCATATGT AATAAAGAGC ATTTATGCAG GAATAATGAA
  ACAATAACAC TCGGGTGTGG TGCTGGGCCT GTCATTAAAC AGGGTGAACC TGTCATTAAA
  R
  CCCTCTCTGA ACGTAAAGAT CAAGTGCTGC CTGGCTCCCG AATCCTGCTA GGGGAGACCA
  AGCGAAGGAA CATACTGCTT TAAAGTTTTT AAATGTTACA ACTGTTGCTA CAGCGAAATA
  GGAAGAGAGG CACACATTAT GTCTGTTGCC AAACAACTCT GGGCCCAGAG ATGCTGTGTG
  GGAACGGCTG GGCAGTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38236213	NES09582611	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	G	G		A	G		G
ss45669817	mCV23376665	ABI	CRAMUS_MOUSE	f	SNP	A						G		G
ss63332964	NES17507779	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	G	G	G	A	G	G	G
ss146947840	ENSMUSSNP3332089	ENSEMBL	ENSEMBL_Sanger	f	SNP									G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28337960					SNP	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236213	NES09582611	PERLEGEN	MM_PANEL	f	SNP	A/G
ss63332964	NES17507779	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89230122 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	846 bp upstream
Cpgi14441	CpG island 14441	620 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	632 bp downstream
Rr595183	regulatory region 595183	1238 bp distal
Rr595184	regulatory region 595184	712 bp distal
Rr595185	regulatory region 595185	448 bp distal
Rr595186	regulatory region 595186	620 bp distal
Rr595187	regulatory region 595187	1586 bp proximal
Tssr42412	transcription start site region 42412	870 bp upstream
Tssr42413	transcription start site region 42413	860 bp upstream