rs28337959 SNP Detail

Summary

• ID
  rs28337959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89230167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTTGCC CTCTTACTGG
  TTTAAACCCA CCTCAGCAAG TATTTGATTT TTAGTTATCA TATGTAATAA AGAGCATTTA
  TGCAGGAATA ATGAAACAAT AACACTCGGG TGTGGTGCTG GGCCTGTCAT TAAACAGGGT
  GAACCTGTCA TTAAAGCCCT CTCTGAACGT AAAGATCAAG TGCTGCCTGG CTCCCGAATC
  Y
  TGCTAGGGGA GACCAAGCGA AGGAACATAC TGCTTTAAAG TTTTTAAATG TTACAACTGT
  TGCTACAGCG AAATAGGAAG AGAGGCACAC ATTATGTCTG TTGCCAAACA ACTCTGGGCC
  CAGAGATGCT GTGTGGGAAC GGCTGGGCAG TTCTTATTAC AAAACATGTT CAGAGTGCTT
  ATGAAGGAGG TCTTAAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38236212	NES09582612	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C		C
ss63332961	NES17507780	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28337959					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236212	NES09582612	PERLEGEN	MM_PANEL	f	SNP	C/T
ss63332961	NES17507780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89230167 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	891 bp upstream
Cpgi14441	CpG island 14441	665 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	677 bp downstream
Rr595183	regulatory region 595183	1283 bp distal
Rr595184	regulatory region 595184	757 bp distal
Rr595185	regulatory region 595185	493 bp distal
Rr595186	regulatory region 595186	665 bp distal
Rr595187	regulatory region 595187	1541 bp proximal
Tssr42412	transcription start site region 42412	915 bp upstream
Tssr42413	transcription start site region 42413	905 bp upstream