rs28335843 SNP Detail

Summary

• ID
  rs28335843
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172532162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTATGT GTGTGAGTGT
  ATGTACCCAC CTGTCTCCAC CTCCCCAGAG CTGCAGATAT GGGCACACTT GGCCACTCCC
  AGTTATTTTA TACTTGAGCT GGGGACATGA ACTTGGGTCC TCATTCTTGT GCAACAAGTG
  CCCTTACCCA CTGAACCATC TCCCCAGGCC TCTCCTAGAC CTAGAAGGTT TTGTTTTTTT
  W
  AATTGGTTTG TTTGTTGTTA AACCAAGGGT CATTTATCGA CCTGTTTACT TATTTTGTGT
  GTGAGCACTT GTAGGGGTTT TCACAAACTC CCAGGAGTCA GTTCTTTCCT GCCAGCTTGT
  AGGACCTCAG GATCAGCCTG CCAGCTCTGC ACACAAGCAC CTCTAACCAC TGAACCACCT
  CTTTGGCCCC ACAGAGCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822387	NES08715342	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28335843					SNP	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822387	NES08715342	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172532162 () rs orientation: forward

Symbol	Name	Function Class
Rr571713	regulatory region 571713	1743 bp distal
Rr571714	regulatory region 571714	696 bp proximal