rs28335838 SNP Detail

Summary

• ID
  rs28335838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172532393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTATCGA CCTGTTTACT
  TATTTTGTGT GTGAGCACTT GTAGGGGTTT TCACAAACTC CCAGGAGTCA GTTCTTTCCT
  GCCAGCTTGT AGGACCTCAG GATCAGCCTG CCAGCTCTGC ACACAAGCAC CTCTAACCAC
  TGAACCACCT CTTTGGCCCC ACAGAGCCTC TTCTGCTTCC TGCACACTAG CTCTGGAAAT
  R
  TGGAGACCAA TATCCCAAGT ATCTGGGAAA GTATATGGCC CCTGGAGAGA TGGCTTAGTG
  GCTAAGAGCA CTGACTGCTC TTCCGAAGGT CCTGAGTTTC AATTCCCAGC AACCACATGG
  TGGCTCACAA CCATCCAAAT GAGATCTGAG TCCCTCTTCT GGAGTGTCTG AAGATAGCTA
  CAGTGCAATC CTATAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822385	NES08715332	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28335838					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822385	NES08715332	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172532393 () rs orientation: forward

Symbol	Name	Function Class
Rr571713	regulatory region 571713	1974 bp distal
Rr571714	regulatory region 571714	465 bp proximal