rs28335831 SNP Detail

Summary

• ID
  rs28335831
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172532900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGGGCC ACTGGCAACA
  CCCATAAATG AACCTGAGAG AGGAGAACCT ACCCTCTGGG GGCTCCACTC CTGCCCTGGT
  CAGGTCCATT GACATGGTAA ATATAACCAT GGGAGCAGAG GGCAGCCAGT TGAGAATCCT
  CGGGGCAACG ACCCAGGGGC CACTTTGAAG GCCAGTCTAT GGGTATCTGC CTATCAGAGG
  S
  ATTGAGCAGC CTTCTCCCTG CTTGGACCAG ACCCACCAAG CTGCCTGGTG ACAGCACACT
  GGGCCATGTT CCCAGCCAGG CTCCTTCCCT ATAGCATCTG AGGCATTTGG TCTTGTTTAT
  CTCTCAAGCA TTCATCCCTG GGCAGGGCCT TTTCATTTGC TTTTTGAGAC AGGATCTCAT
  GTAGCCCAGG CTAGGCTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822378	NES08715319	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28335831					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822378	NES08715319	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172532900 () rs orientation: forward

Symbol	Name	Function Class
Rr571714	regulatory region 571714	within coordinates