rs28335828 SNP Detail

Summary

• ID
  rs28335828
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172533005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGGGAG CAGAGGGCAG
  CCAGTTGAGA ATCCTCGGGG CAACGACCCA GGGGCCACTT TGAAGGCCAG TCTATGGGTA
  TCTGCCTATC AGAGGCATTG AGCAGCCTTC TCCCTGCTTG GACCAGACCC ACCAAGCTGC
  CTGGTGACAG CACACTGGGC CATGTTCCCA GCCAGGCTCC TTCCCTATAG CATCTGAGGC
  W
  TTTGGTCTTG TTTATCTCTC AAGCATTCAT CCCTGGGCAG GGCCTTTTCA TTTGCTTTTT
  GAGACAGGAT CTCATGTAGC CCAGGCTAGG CTCAGATTCA CTGTATAGCT AAGGCTGACC
  CAGAATTCTC CTGCCTCAAT GCTCACCTAT ATCTGAGTTA CACCAAGAAA ACAGTCGTGG
  TAGCAGCAGC GTGTGGGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822375	NES08715325	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28335828					SNP	A	A	A	A	A	T	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822375	NES08715325	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172533005 () rs orientation: forward

Symbol	Name	Function Class
Rr571714	regulatory region 571714	within coordinates