rs28335520 SNP Detail

Summary

• ID
  rs28335520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147511565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGATTGTTTG CCTCTACTGG CTGAGTTATC TCAAGACTCG
  AAAATGATTT TTCTATTTAA GTATTTCTAT TAAATTTTTT ATCTTTTAAT TAGCCAAAAC
  R
  TTCTCATTCT CTTTCTGTGT CTCTATTCCT CTGTCTGTCT CTGACTGTCT GTCTCTGTCT
  GTCTGTCTGT CTGTCTCTGT CTCTCTCTCT CTCTGTCTCT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37807228	NES09116490	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	A	G	G	G	G
ss147959152	ENSMUSSNP5587511	ENSEMBL	ENSEMBL_Sanger	f	SNP						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs28335520					SNP	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37807228	NES09116490	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147511565 () rs orientation: forward

Symbol	Name	Function Class
Rr398813	regulatory region 398813	753 bp upstream
Rr398814	regulatory region 398814	1662 bp upstream
Rr604485	regulatory region 604485	889 bp distal
Rr604486	regulatory region 604486	975 bp distal