rs28335174 SNP Detail

Summary

• ID
  rs28335174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134874984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTTCCCGG CTGTGCAACC TTGTGCAAGT TTCTTAACCT
  CTCTGGGCTT CTGTTTTTCT CTTGTATAAC GGACATGATG GCCCCAGAAA AAAAATGCTT
  Y
  AAGGTGGCAT AAGTGAGCAT GGGGTATAGA ATGTGACAGA GGTGACTGCC AGGCAGAGGC
  TCCCTTCCTG TCCCTGACCA CTGCATCCCT TGCTGTGGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37764002	NES09155334	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28335174					SNP	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37764002	NES09155334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134874984 () rs orientation: forward

Symbol	Name	Function Class
Rr601931	regulatory region 601931	176 bp distal
Rr601932	regulatory region 601932	1705 bp proximal
Runx3	runt related transcription factor 3	Intron