rs28335169 SNP Detail

Summary

• ID
  rs28335169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134876075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CCCTCTAAAT CCGGTTCTCA
  R
  TTCTGCAATT GGAAAACACA CCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37763997	NES09155339	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		G	A	G	G		G	A	G	G		G
ss45699463	mCV22865504	ABI	CRAMUS_MOUSE	f	SNP		G	A				A		A
ss147540578	ENSMUSSNP6961097	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss321351017	CHEV_4_134704679	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28335169					SNP	G	G	A	A	A	A	A	G	A	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763997	NES09155339	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134876075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	1659 bp proximal
Rr601931	regulatory region 601931	1267 bp distal
Rr601932	regulatory region 601932	614 bp proximal
Rr601933	regulatory region 601933	1852 bp proximal
Runx3	runt related transcription factor 3	Intron