rs28335168 SNP Detail

Summary

• ID
  rs28335168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134876501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGTAACT ACACACGTCT
  GAAAACAGGA TACAGAGTTG TGTTTACTAA CAGCATTTTA TGGCTTTCAC TTTCTCTCAG
  CCTTGGGGAG GGAGTGCTCA CTGCCCCTCT CCTGCCAGCA GGAACCCCTA GTTCCCCCTC
  CCCAAGAAAG AATGTTAGAA AGAAGTCCCT CAACATAGGA AAGTCCCCTG AGAGTTCCAG
  R
  GACTAAGCTG TAGGCAGGAT CCACACTGGG TGCCGGGACC AGAATGGAGA CACTCCATTT
  CTAGAAGGAA CCGACACCTC TGGGGGAGAG GAAAAGGACT GTGGTGTCCA TGGTGATGGT
  CACTTTCTAC TTAGGTCAGG GCTGCTTGTG GGAGGGCAGT AGTGAAGGTC TGGAGCCTTG
  ACAGCAAGAA GGCCCTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763996	NES09155340	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28335168					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763996	NES09155340	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134876501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	1233 bp proximal
Rr601931	regulatory region 601931	1693 bp distal
Rr601932	regulatory region 601932	188 bp proximal
Rr601933	regulatory region 601933	1426 bp proximal
Runx3	runt related transcription factor 3	Intron