rs28335167 SNP Detail

Summary

• ID
  rs28335167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134876611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCAGCA GGAACCCCTA
  GTTCCCCCTC CCCAAGAAAG AATGTTAGAA AGAAGTCCCT CAACATAGGA AAGTCCCCTG
  AGAGTTCCAG AGACTAAGCT GTAGGCAGGA TCCACACTGG GTGCCGGGAC CAGAATGGAG
  ACACTCCATT TCTAGAAGGA ACCGACACCT CTGGGGGAGA GGAAAAGGAC TGTGGTGTCC
  R
  TGGTGATGGT CACTTTCTAC TTAGGTCAGG GCTGCTTGTG GGAGGGCAGT AGTGAAGGTC
  TGGAGCCTTG ACAGCAAGAA GGCCCTCAAA AGTTGCCTTC AGTGCTAGCT CTATGTAAAG
  GCAAGCACCC GATAGTCTGT AGGCAGCAGG TAGCCCTCAG GCCAGCCTAG GAGAAAGGAG
  GAGCAAGGTG GCCACAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37763995	NES09155341	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28335167					SNP	A	A	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763995	NES09155341	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134876611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	1123 bp proximal
Cpgi15062	CpG island 15062	1978 bp proximal
Rr601931	regulatory region 601931	1803 bp distal
Rr601932	regulatory region 601932	78 bp proximal
Rr601933	regulatory region 601933	1316 bp proximal
Runx3	runt related transcription factor 3	Intron