rs28335166 SNP Detail

Summary

• ID
  rs28335166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134876715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGATCCA CACTGGGTGC
  CGGGACCAGA ATGGAGACAC TCCATTTCTA GAAGGAACCG ACACCTCTGG GGGAGAGGAA
  AAGGACTGTG GTGTCCATGG TGATGGTCAC TTTCTACTTA GGTCAGGGCT GCTTGTGGGA
  GGGCAGTAGT GAAGGTCTGG AGCCTTGACA GCAAGAAGGC CCTCAAAAGT TGCCTTCAGT
  R
  CTAGCTCTAT GTAAAGGCAA GCACCCGATA GTCTGTAGGC AGCAGGTAGC CCTCAGGCCA
  GCCTAGGAGA AAGGAGGAGC AAGGTGGCCA CAGCTCTGTC CTAGGTTCTG AGTTCTAGAA
  AGCGCTGTGA AAGCTACCAC CAGATGAGTG TTTCACAGGT GAGGGTGTGA CACTTGGCAA
  AGACAGTTGG CGTGATAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763994	NES09155343	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28335166					SNP	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763994	NES09155343	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134876715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	1019 bp proximal
Cpgi15062	CpG island 15062	1874 bp proximal
Rr601931	regulatory region 601931	1907 bp distal
Rr601932	regulatory region 601932	within coordinates
Rr601933	regulatory region 601933	1212 bp proximal
Runx3	runt related transcription factor 3	Intron