rs28335165 SNP Detail

Summary

• ID
  rs28335165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134876741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC TCTATGTAAA GGCAAGCACC
  Y
  GATAGTCTGT AGGCAGCAGG TAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37763993	NES09155345	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	C	C	C	C		C	C	C		C
ss45602483	mCV22865505	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss147540581	ENSMUSSNP5957351	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss321351020	CHEV_4_134705345	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28335165					SNP	T	T	T	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763993	NES09155345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134876741 () rs orientation: forward

Symbol	Name	Function Class
Rr601931	regulatory region 601931	1933 bp distal
Rr601932	regulatory region 601932	within coordinates
Rr601933	regulatory region 601933	1186 bp proximal
Runx3	runt related transcription factor 3	Intron