rs28335164 SNP Detail

Summary

• ID
  rs28335164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134876799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGGTGT CCATGGTGAT
  GGTCACTTTC TACTTAGGTC AGGGCTGCTT GTGGGAGGGC AGTAGTGAAG GTCTGGAGCC
  TTGACAGCAA GAAGGCCCTC AAAAGTTGCC TTCAGTGCTA GCTCTATGTA AAGGCAAGCA
  CCCGATAGTC TGTAGGCAGC AGGTAGCCCT CAGGCCAGCC TAGGAGAAAG GAGGAGCAAG
  R
  TGGCCACAGC TCTGTCCTAG GTTCTGAGTT CTAGAAAGCG CTGTGAAAGC TACCACCAGA
  TGAGTGTTTC ACAGGTGAGG GTGTGACACT TGGCAAAGAC AGTTGGCGTG ATAGAGCGTC
  TTTCTGGAGC AGTCCTGTGC CAAGCACTTC ACACGTGATC CCAGATTCAG CTGTTCTCCC
  CTGTACAGTT GAGAGGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37763992	NES09155347	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28335164					SNP	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763992	NES09155347	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134876799 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	935 bp proximal
Cpgi15062	CpG island 15062	1790 bp proximal
Rr601931	regulatory region 601931	1991 bp distal
Rr601932	regulatory region 601932	within coordinates
Rr601933	regulatory region 601933	1128 bp proximal
Runx3	runt related transcription factor 3	Intron