rs28335161 SNP Detail

Summary

• ID
  rs28335161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134878000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCAGAAA GTAGCTCTTC
  CCCAACGCTC CGTGGCTTGG AAAACCCGTG CTGCCCGTGC TGCCCCTGCT GCAGGCGCAA
  GTCTGTGCTC TGAGTCTGGT GGGGGCAACT GAGCAGCCAG CAAGGCGCCA GCGCCAACTA
  GTGGGCGGTT CACGACACTG CTTCAGCCCG GGCGACCCTT CACCTGCGAC CTCAGGCTGC
  R
  TACTGAAGGC CAGCACTTCC CCAACCCTTG GATCTGGTGC CCGCGTCTTC CGAGGGTTAT
  AGCTGAGTCC GGGCCCAGGG TCAGATGTTG GGTCATTCCT GTAGCCCCAC TTTCCGGAGA
  CCCGGTTATT AATTTGTTGT AAGATCAGAA AGAGAAATCA GGCGGAGGGA CTAGTATGGG
  GCAGATGCAA ACTGGAATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763989	NES09155350	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28335161					SNP	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763989	NES09155350	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134878000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	within coordinates
Cpgi15062	CpG island 15062	589 bp proximal
Cpgi15063	CpG island 15063	1140 bp proximal
Rr601932	regulatory region 601932	within coordinates
Rr601933	regulatory region 601933	49 bp distal
Rr601934	regulatory region 601934	1317 bp proximal
Runx3	runt related transcription factor 3	Intron
Tssr1337	transcription start site region 1337	1584 bp upstream
Tssr39602	transcription start site region 39602	1847 bp upstream