rs28335159 SNP Detail

Summary

• ID
  rs28335159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134878080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTGCTC TGAGTCTGGT
  GGGGGCAACT GAGCAGCCAG CAAGGCGCCA GCGCCAACTA GTGGGCGGTT CACGACACTG
  CTTCAGCCCG GGCGACCCTT CACCTGCGAC CTCAGGCTGC GTACTGAAGG CCAGCACTTC
  CCCAACCCTT GGATCTGGTG CCCGCGTCTT CCGAGGGTTA TAGCTGAGTC CGGGCCCAGG
  R
  TCAGATGTTG GGTCATTCCT GTAGCCCCAC TTTCCGGAGA CCCGGTTATT AATTTGTTGT
  AAGATCAGAA AGAGAAATCA GGCGGAGGGA CTAGTATGGG GCAGATGCAA ACTGGAATCA
  CTCAAGAAAT CGAATTTATG CATCGCATCG CAGAGGCTGC CAGTCACGGC CCACAATCGC
  TCGAGGGCAG AATAGACGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763987	NES09155352	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28335159					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763987	NES09155352	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134878080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	within coordinates
Cpgi15062	CpG island 15062	509 bp proximal
Cpgi15063	CpG island 15063	1060 bp proximal
Rr601932	regulatory region 601932	within coordinates
Rr601933	regulatory region 601933	129 bp distal
Rr601934	regulatory region 601934	1237 bp proximal
Runx3	runt related transcription factor 3	Intron
Tssr1337	transcription start site region 1337	1504 bp upstream
Tssr39602	transcription start site region 39602	1767 bp upstream
Tssr39603	transcription start site region 39603	1933 bp upstream