rs28335158 SNP Detail

Summary

• ID
  rs28335158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134878219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAACCCT TGGATCTGGT
  GCCCGCGTCT TCCGAGGGTT ATAGCTGAGT CCGGGCCCAG GGTCAGATGT TGGGTCATTC
  CTGTAGCCCC ACTTTCCGGA GACCCGGTTA TTAATTTGTT GTAAGATCAG AAAGAGAAAT
  CAGGCGGAGG GACTAGTATG GGGCAGATGC AAACTGGAAT CACTCAAGAA ATCGAATTTA
  Y
  GCATCGCATC GCAGAGGCTG CCAGTCACGG CCCACAATCG CTCGAGGGCA GAATAGACGA
  CTCGGTCTGG GTCCTACCTG GTGACTAGCG GTGCTCCCTT TCCAGGGGAG CCCCCTGAGG
  GCCCATGCTC AGGGCCAGGC TTCCTAGATC CCCTCTGGTC CAGAGGCTGT TTCCATGGCG
  GCCCAAGGCC TAGTGATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763986	NES09155353	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28335158					SNP	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763986	NES09155353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134878219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	within coordinates
Cpgi15062	CpG island 15062	370 bp proximal
Cpgi15063	CpG island 15063	921 bp proximal
Rr601932	regulatory region 601932	within coordinates
Rr601933	regulatory region 601933	268 bp distal
Rr601934	regulatory region 601934	1098 bp proximal
Runx3	runt related transcription factor 3	Intron
Tssr1337	transcription start site region 1337	1365 bp upstream
Tssr39602	transcription start site region 39602	1628 bp upstream
Tssr39603	transcription start site region 39603	1794 bp upstream