rs28335155 SNP Detail

Summary

• ID
  rs28335155
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134879236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG TTTTCAAAGA CCCATGAGCT
  K
  CCAAGACAGA GGACAACTCC ACGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37763983	NES09155356	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	G	G	T		G	G	G	G		G	G	G	G		G
ss45683765	mCV22865514	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		G
ss147540602	ENSMUSSNP2356789	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							G
ss321351028	CHEV_4_134707840	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28335155					SNP	T	T	T	T	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763983	NES09155356	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134879236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	939 bp distal
Cpgi15062	CpG island 15062	380 bp distal
Cpgi15063	CpG island 15063	within coordinates
Rr601932	regulatory region 601932	920 bp distal
Rr601933	regulatory region 601933	1285 bp distal
Rr601934	regulatory region 601934	81 bp proximal
Runx3	runt related transcription factor 3	Intron
Tssr1337	transcription start site region 1337	348 bp upstream
Tssr39602	transcription start site region 39602	611 bp upstream
Tssr39603	transcription start site region 39603	777 bp upstream
Tssr39604	transcription start site region 39604	1069 bp upstream