rs28334782 SNP Detail

Summary

• ID
  rs28334782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134792127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGGAGA TTCACCATGC
  GGGGAGACTG TGGAGGAGAG GAGAGACGCC ATGTCTGAGA GGAGTGCAGG ACAGAGAGAG
  GCATGGCTGC CATGTGAAAC AGCCAGGAGA GTGTGGCCCA GAGGGCTGCC CAACTGGGTC
  CAGGGCAGCC AAGATAGAAC ACTGTGTGTG GATTCTTAGG TATCTGGCTG TCCAATGCCT
  R
  TGACCAGGGA AAACAGCTAG AGGTTAGCTG GTGGATGTAC ACCAAGATGG GAAAGCCCTG
  GGGAGATGGT GGGGAGACCG GCACCCTTGT GCACTCTCTG TGTTTGGAAC TCACACCCAC
  TCTCTGGGCC TGCACTCTCA TTAGTTCCCA ATAACCACTC AGGAAACGAG ACCCAGAGAG
  GTCCAAGAAG GAGGCATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763605	NES09157858	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss45617599	mCV25002176	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss147539968	ENSMUSSNP4074492	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28334782					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763605	NES09157858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134792127 () rs orientation: forward

Symbol	Name	Function Class
Rr601914	regulatory region 601914	1821 bp proximal