rs28334780 SNP Detail

Summary

• ID
  rs28334780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134792456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCACTCT CATTAGTTCC
  CAATAACCAC TCAGGAAACG AGACCCAGAG AGGTCCAAGA AGGAGGCATT TGTCAAATAA
  ACTCATCAAT GAACAAGCAA ATGGCCAGAC CTCCCAGCAG CTGCCAATGA ATAGTTCCTG
  GAGCTCACAA GATCCCAGTC CTCACTACAA CCTGTCTTCC CCCAGCTCAC GATCTCTGCT
  Y
  CCTTAAATTG ACTGGTTCAG TTGCGATCCC TTTGGTCACA GATGTGCAGG GACACACCAA
  GGAAGCTAGG CAGGTCCTGG GCTCAGTACC TCTGTCTGCT AAATGGGAGT AGTTACTGTT
  AGTTCTCAAC TTGACTGAAG TTATCACCTT GGAAAGAGTG TCAATGAGGG ACTGTGTAGA
  TCAGGCATGC CTGCCCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763603	NES09157860	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28334780					SNP	T	C	C	C	C	C	T	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763603	NES09157860	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134792456 () rs orientation: forward

Symbol	Name	Function Class
Rr601914	regulatory region 601914	1492 bp proximal
Rr601915	regulatory region 601915	1771 bp proximal