rs28334774 SNP Detail

Summary

• ID
  rs28334774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134793610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCACTTA CAGCCCCACT
  ATGGCTGGGT GCATCAGACC ATGCCTGAGG TGCTCTTGGC ACCTATCCTG AATGGATCCA
  CACTTTGGAG ACTATGTCCT GCCCCTCACA CCTCAGGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTATGC CAGTGGTGAT ATGCTATAGA AACTTTGGAA
  Y
  CCAAGGCCAC TCTCTAAATA GCCTGACCTG GGAGGCAGAA GCCTGGGGTT TCAGTTGAAC
  TCTGCCACTG ATTTACCCTG TGACCTCCAA CATGACCTTT CTGAACCTTT GTTTCTTCCC
  TACAAGGCTC AAAAGATCCT CGAAAAGTTA GGAGTCTCCG AGAAGTGGGA ACCACAGTGG
  TCTGTATCTA TGTTATCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763597	NES09157841	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28334774					SNP	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763597	NES09157841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134793610 () rs orientation: forward

Symbol	Name	Function Class
Rr601914	regulatory region 601914	338 bp proximal
Rr601915	regulatory region 601915	617 bp proximal
Rr601916	regulatory region 601916	1012 bp proximal