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rs28334771 SNP Detail
Summary
  • ID
    rs28334771
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:134794180 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTAATCACC CCACCCCCAA
    AGTCTCACCA ACTGGCACTC TGCAAATTTT GTAAGTTCTG CTCTTCATCA GAGGATGCTA
    TTCCTAGAAG AAAATGGGTC TCGTCTCTGT GAAAGTAGAG CCCCTCCCCC TTCCAGGAGT
    CTTCCAGGAG TGAGACCATA TTCGCCAGAG CTGCAGTGGT GACTTCAGGA AGAACTCAGC
    Y
    AGCAAGGTCA TGCAGAGACT ATCAGAGCCT ACGAAAACTG ACCGTCATCG CCACTAGGGG
    GCGGCCGGGC TATGTGCAGG TGTGAGGTGT TGCCCAGGGC TAGTCACTTT TACCATAGGC
    TAGTCCTGTT CCTGGTCTTA TCCTGCAGAC GCGAGGAGGC CTGGTCTATC TCCTTGCCTT
    CCATTTGGGT AAGGGAAAAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37763594 NES09157815 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T C C T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28334771 SNP T T T T T T C T T C C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37763594 NES09157815 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:134794180 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr601914 regulatory region 601914 within coordinates
Rr601915 regulatory region 601915 47 bp proximal
Rr601916 regulatory region 601916 442 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory