rs28334764 SNP Detail

Summary

• ID
  rs28334764
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134795548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACGGTGA GCTGTGGGGG
  AGGGGGAGGT GGTAAGGGCG GTGATGGTCA CAGTGGTGTG AGATGGTGTC AACCGTGGTA
  AGTGATGTTG CCGGTGGTGG GGGTGTCAGT GACAACGTTG TTGTTAGGTG GTGGTGGTGG
  GGATAGTACA GGCAGACCCA GCCTGACTGT ATGAATGGGG CTGACTCCTT CAGCTCCAGC
  Y
  ATTGCCAACC TAGACGTGGC GAGCTCTGAG CTTCCCAGAA AAAGGAGCCA TACCGGAATG
  CCAACTGATC CTCCCTCTTC CTTGTCGCCA GGGCTCCTCC TATTCCTCCT CTACAGACGA
  GGCAGGAAGG CAGACTGCTC TTTTTTATTT TATTTTATTT CATTTCATTT CATTTCATTT
  TATTTTATTT TTAATTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763587	NES09157754	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28334764					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763587	NES09157754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134795548 () rs orientation: forward

Symbol	Name	Function Class
Rr601914	regulatory region 601914	468 bp distal
Rr601915	regulatory region 601915	1300 bp distal
Rr601916	regulatory region 601916	905 bp distal
Rr601917	regulatory region 601917	1570 bp proximal
Tssr1336	transcription start site region 1336	1362 bp downstream