rs28334762 SNP Detail

Summary

• ID
  rs28334762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134795613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCAACCG TGGTAAGTGA
  TGTTGCCGGT GGTGGGGGTG TCAGTGACAA CGTTGTTGTT AGGTGGTGGT GGTGGGGATA
  GTACAGGCAG ACCCAGCCTG ACTGTATGAA TGGGGCTGAC TCCTTCAGCT CCAGCCATTG
  CCAACCTAGA CGTGGCGAGC TCTGAGCTTC CCAGAAAAAG GAGCCATACC GGAATGCCAA
  Y
  TGATCCTCCC TCTTCCTTGT CGCCAGGGCT CCTCCTATTC CTCCTCTACA GACGAGGCAG
  GAAGGCAGAC TGCTCTTTTT TATTTTATTT TATTTCATTT CATTTCATTT CATTTTATTT
  TATTTTTAAT TTTGCCTATA AGCATTTGAC AAAATCTGAG TCGGAACTCC CCGATGTCCC
  TAAGGCTCAT GGGCTGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37763585	NES09157756	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28334762					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763585	NES09157756	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134795613 () rs orientation: forward

Symbol	Name	Function Class
Rr601914	regulatory region 601914	533 bp distal
Rr601915	regulatory region 601915	1365 bp distal
Rr601916	regulatory region 601916	970 bp distal
Rr601917	regulatory region 601917	1505 bp proximal
Tssr1336	transcription start site region 1336	1297 bp downstream