rs28334715 SNP Detail

Summary

• ID
  rs28334715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131822075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTCAAT TCCCAGCAAC
  CACTTGGTGG CTCACAACCA TCTGTAGTGG GATCCGATGC CCTCTTCTGG TGTATCTGAA
  GAGAGCAACA GTGTACTCAC AAAAAATAAG TAAATCTTTT TTTTAATTAA AAAATAAATA
  AATAGTTTTA AAAACAAAAG AAAAATGTCT TCAAGATACC TTGATCTATA CTCGTGACCA
  Y
  CTGCCCCATA ATGTATGACT TCTCTTTCAC ATGATATATA TTTTTGCCTT TATTTTTACC
  TTTCATTGTA CTTTCTCTTT CTTTTTCTAA AGATTTATTT ATTTACTTTC TGTATATGAG
  CACACTATCT GTCTTCAGAT GCATCAGATC CCATTATAGA CCTCTAAAAC TGGAAAAACC
  AGTGTCCATG TCCACCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37747381	NES09171008	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28334715					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747381	NES09171008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131822075 () rs orientation: forward

Symbol	Name	Function Class
Gm13214	predicted gene 13214	466 bp downstream
Rr600873	regulatory region 600873	1258 bp distal
Rr600874	regulatory region 600874	126 bp distal
Rr600875	regulatory region 600875	383 bp proximal