rs28326405 SNP Detail

Summary

• ID
  rs28326405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101072912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCCC ATACACACAC
  ACTTTTTACA AATTTCTAAG AAATTAAATT GACCCTAGCA TTTGCAAATC CTCAGACATT
  GAGGCAGGCA CTAGAGATTC AAAGATAAGC ATGATTCACT TTACAAAAAG TAAAGTTTAA
  CTAAAGCCAG GTAGGCAACA GCTCCAGCCC AGTAACTAGA GGTAGGGAAT AAAGGCTTAC
  R
  TTAAACAAGG GACTGCTCCT GCTGTCAGAC TCTTCAGCAG CTGTGCGGGA GGACACTGGC
  ATAAAGTCCT AGACTAACCG AGACATAAAC AGTTGGGCGA GAACAGACAC TCTGAGAAAG
  AACCACTAAG GACTTTAGCA AAGCAAAAAT ATCTGCATGG ATATCTTTAA AACACAACTA
  TAATATTTAA GTGGTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38313235	NES09510587	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A		G	A	A	G		G
ss321229161	CHEV_4_100888320	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28326405					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313235	NES09510587	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101072912 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Jak1	Janus kinase 1			Intron
				Noncoding-Transcript-Variant
Rr596092	regulatory region 596092			1843 bp distal
Rr596093	regulatory region 596093			1269 bp proximal