rs28326400 SNP Detail

Summary

• ID
  rs28326400
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101073686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCAAAGT ATTTATGTAA
  AATAAAGTAA GGCTTTTTAA ATTATTATTT AAGGATCAAA TCTACAAATT GGTGACAGGA
  GAAGACAGGA GAAACTTCAG CTAGCATTTG GGGACAAGAA AGTGGATGTG TGGGAAAAGG
  ACTTAGCCCA TGAGCACAGA AGTCCAGACT CATACTGGCA GAACAGAGGA CCAAGCCAAC
  S
  GAGCGAGCAT CAAGGTGTCA GCGTGCATTC CTGGAGTGCA CTCACCAGAA CACAGTAGCA
  AGTAGAGAAG AGGCTGAGAA AAAACCTCTG AGGAGAAGAA TCCTGTTTCC AGCCTTCTGC
  CCTCACAAAG GTTTAGCGCA GCACTATCCT GTACACTTCT CCATGATAAC AAACTGTTCT
  GCACCTGTCC TGTCTAACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38313230	NES09510592	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28326400					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313230	NES09510592	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101073686 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Jak1	Janus kinase 1			Intron
				Noncoding-Transcript-Variant
Rr596093	regulatory region 596093			495 bp proximal
Tssr37984	transcription start site region 37984			1294 bp upstream