rs28326391 SNP Detail

Summary

• ID
  rs28326391
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101076540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGTGGG AGGACTATGA
  ATCCAAGGCC AGTTTGGGCT ACATGGTGAG GGCCTGTCTC AAAGAAAATA GCATAAAAAC
  AAAGACATTA ACAAGATGCT ATATTTAAAG CTCTGACCCA ATGGGACTGG TAAGTAGACA
  TACATCAACA CCAATTACCT TGTCCTCTCC AGCTACAAAA TACTGTGTGT TCCTTTAAAG
  S
  TGGTTTCAAA TAGTAGCAAC CTTCTAAATT CTGACAGAGC AAGAATTCCC TTTGCCAGTT
  TGTCCTCTTT CACAGTCAGT GTGTGCTTCC TGTAACAAAC TGAGGACAGA AAAACAGAAA
  CAAAAACAAA ACAAAACAAA CAAACAAACA AAAAAAAAAC CATTACTTTT CCTAATGATG
  TTCCTCTTCC AGACTTCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38313221	NES09510452	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28326391					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313221	NES09510452	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101076540 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm19063	predicted gene, 19063			420 bp upstream
Jak1	Janus kinase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr596093	regulatory region 596093			1644 bp distal
Tssr37984	transcription start site region 37984			1525 bp downstream