rs28326207 SNP Detail

Summary

• ID
  rs28326207
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101139708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCTTGGGC AGCTACTCAC
  TAAGGTAGAA ATGAAATAGA TTCAGTTAAT AGAGTAGCAG AAAGAAAATC AACCCCAAGC
  TAGAGCAAGC ACCCTCACTT CCCTGGACTT CAAGGTCTTA TTGGCACACA TGTTTGAACA
  GAGTTATGTC AACACTGAAG TAAATAACAC CCAAGCAGTT CCTATCAAGT AGCCTACCCA
  M
  TGGCTGAAAG GACAGACCAG TTTCTTTCTA TGGAGCTTCT GTGTTTGAGT GGAAATCCTT
  CTTTTTACAG TGTGTCAAAT GAAAGTCAGT ACTCAGGGCT GACATTCATA TCTCTTGAGC
  AGATGCTTCT AATGCAGCTA ACATTACACC TGGAAGTGGC ATTTGCTTAT TCATAAATGA
  GCAGATTAAG CACTGATCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38313035	NES09547025	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		A	A	C
ss321229183	CHEV_4_100955116	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28326207					SNP	A	A	A	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313035	NES09547025	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101139708 () rs orientation: forward

Symbol	Name	Function Class
Gm12801	predicted gene 12801	1697 bp upstream
Gm69021	predicted gene, 69021	within coordinates
Rr376921	regulatory region 376921	514 bp upstream
Rr596107	regulatory region 596107	1437 bp proximal
Rr596108	regulatory region 596108	1608 bp proximal