rs28326206 SNP Detail

Summary

• ID
  rs28326206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101139796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCTCAC TTCCCTGGAC
  TTCAAGGTCT TATTGGCACA CATGTTTGAA CAGAGTTATG TCAACACTGA AGTAAATAAC
  ACCCAAGCAG TTCCTATCAA GTAGCCTACC CAATGGCTGA AAGGACAGAC CAGTTTCTTT
  CTATGGAGCT TCTGTGTTTG AGTGGAAATC CTTCTTTTTA CAGTGTGTCA AATGAAAGTC
  R
  GTACTCAGGG CTGACATTCA TATCTCTTGA GCAGATGCTT CTAATGCAGC TAACATTACA
  CCTGGAAGTG GCATTTGCTT ATTCATAAAT GAGCAGATTA AGCACTGATC CAACATTTCT
  CAGCAGCACC CACCATCATG GAAGGTAAAT TGGTACCACT GTCAATATCC TTTGAACTAT
  CATTTGGGAA GAGATTAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38313034	NES09547027	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		A	A	G
ss321229184	CHEV_4_100955204	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28326206					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313034	NES09547027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101139796 () rs orientation: forward

Symbol	Name	Function Class
Gm12801	predicted gene 12801	1609 bp upstream
Gm69021	predicted gene, 69021	within coordinates
Rr376921	regulatory region 376921	426 bp upstream
Rr596107	regulatory region 596107	1349 bp proximal
Rr596108	regulatory region 596108	1520 bp proximal