rs28326204 SNP Detail

Summary

• ID
  rs28326204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101141023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATACAC AGACTCTGGC
  CAGTGGATAT GATCCCCATC CTAGACTGTG AGGGAATACA ACATGGCCCA CGTTTCTATC
  TGTTTGCAGC CATTGGTGGA TGCGTGGGTA GACAAAATGA TCTATACAAG GCAGGGAGCA
  ACACAACCAC TTGGGGGAAC TGAGTCCTAG AACTCACATT GCTAGGTGAG GCAACCTTTG
  Y
  TCTCCAGACT TGCCTAAGCT TGAACCTGAA CAGACAGATT AAGGACATGA CGGTCACAGA
  ACTGTTAGCT TGTCAAGGGT GGTTAAGAAG CCTTCATAAA CTTTCCAGGG AAATGCATGG
  TTAGTGCTGA TATCAGGCGT AACCAACCTA GGATAAAGCA CCTTGTTAAC CAGGGAGCCT
  AGGAAAGATG ATCCATTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38313032	NES09546973	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28326204					SNP	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313032	NES09546973	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101141023 () rs orientation: forward

Symbol	Name	Function Class
Gm12801	predicted gene 12801	382 bp upstream
Gm69021	predicted gene, 69021	within coordinates
Rr376921	regulatory region 376921	within coordinates
Rr596107	regulatory region 596107	122 bp proximal
Rr596108	regulatory region 596108	293 bp proximal