rs28326203 SNP Detail

Summary

• ID
  rs28326203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101141662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGGTAA GAAACATCAA
  TCCCTGACTT ATTCTTTTTA CTAGAGGTAA CTGAAGATGG TAATGTTTAT TAGTTGATGG
  CTTGCTTGTG CTTTCCGCTG TTTTGAAGTA AGGTACTAGC TTTGTTTCCC ATGAACCCAT
  GGGCTCCCCC AAAAAGTAGA TGTTTTCTCA ACTCCATATC AGATGCTTTC ACATAAATAT
  Y
  CCAAACCACC CATGTCAGAA GGGTTTCCAC CATGGACACC GCCAATCTTG ACACTGAGGT
  TTCTCACACC ATCCCTTCTC AGGCAGGCTA GTAAACATCT GTTAGCATGC TACTGATTTT
  ACAGTGGAAG ATCCAAAACA TAACAGTTTG GTCATGTAAA TGACGAGTCA AGAAAAAGTG
  TACACAGACA GTAAAGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
ss38313031	NES09546975	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
rs28326203					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313031	NES09546975	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101141662 () rs orientation: forward

Symbol	Name	Function Class
Gm12801	predicted gene 12801	within coordinates
Gm69021	predicted gene, 69021	336 bp upstream
Rr376921	regulatory region 376921	within coordinates
Rr596107	regulatory region 596107	347 bp distal
Rr596108	regulatory region 596108	243 bp distal