rs28326200 SNP Detail

Summary

• ID
  rs28326200
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101142433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATCAACC AAAACAAACA
  CTTCTTAAGG GAAGAAAGGC TTCATAGGAA ACCAGCTCTG CCAAGACTGT GTTTATCCAG
  AAGAGTAAGA AAATAAATTT CTGTTACTTA AGCTGCCCAG GTTTAAACAA TACAACAAAG
  GCTTAAATAA ACCCAAACCA ACAAAACCAG CAAGACTCCT GTCTCTCCAT CTCAGCAGAC
  S
  GGGTGTCCGG GTTGTGGGGT TGTAGTTGGG TTTAACACTT AGCCACATTT ACGGTGAACT
  TAATCACCCT ACGAGAAAAA GCAGGATTTT AAAAATGTCC AGGACTTTTC TCACCTAGTA
  CCTTGCCCTG ACTATCTTCA TGGCTTTCTG GATTTTCCCA TAGACAAAGG TGCTTCAAAA
  ATAGTAACAA ATAAAAAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38313028	NES09546870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28326200					SNP	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313028	NES09546870	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101142433 () rs orientation: forward

Symbol	Name	Function Class
Gm12801	predicted gene 12801	within coordinates
Gm69021	predicted gene, 69021	1107 bp upstream
Rr376921	regulatory region 376921	214 bp downstream
Rr596107	regulatory region 596107	1118 bp distal
Rr596108	regulatory region 596108	1014 bp distal