rs28325752 SNP Detail

Summary

• ID
  rs28325752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98691799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGACACTG AGGTGAAGAT GAAGGTGTCT
  AAAGCACATG GTATCCACCT TCTCAGGAGA CAGAGAGAAA TGAAGGCAGA GAGTAAGGGG
  TCTGGTAGGA TCTGGGAACT TGTGGAAAGC AGCTGAGATT TACAACCAGG CAGTGAGATG
  R
  ATAGGTCGAG ACAAATATGA GTCTGCACAA ATATGAGTGG GGTCATGTAG CAGACGAGGC
  CAAAGGGCTC GGATTTCACC TAGCTCTTGT CCTGAGTTAG GGAAATGGGA CAGTGAAGCT
  TAACCTCAAA GGAGTCAAGG GGAGACTGTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38242180	NES09557117	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G	A	A	A		A
ss321221724	CHEV_4_98470253	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28325752					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38242180	NES09557117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98691799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kank4	KN motif and ankyrin repeat domains 4			Intron
				Noncoding-Transcript-Variant
Rr595790	regulatory region 595790			1507 bp distal
Rr595791	regulatory region 595791			483 bp proximal
Rr595792	regulatory region 595792			1642 bp proximal