rs28325749 SNP Detail

Summary

• ID
  rs28325749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98692063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTCGGA TTTCACCTAG
  CTCTTGTCCT GAGTTAGGGA AATGGGACAG TGAAGCTTAA CCTCAAAGGA GTCAAGGGGA
  GACTGTAGGT AGGGCATAGA AGATACACAC AGCAGAGGAG GAGCTGGGAA ATGGGAGAGC
  AGGCTTAACA TCCTGTGAGC CATGCTAACA ATGTAGGCAA GGACAAGCAA GTAGCTGTGG
  Y
  GTGTGACATC TGAGGTCTGT TGACTGGCCA CCCTACCCAA GGCTCTCATT AAAATGGGGT
  CCCAAAGCTT TCCAACACTC ATGAGTTTTC TTGGTTTAAT AGTGAACGCC CTTAACTCTC
  CTCCGGCTTC CTGTGCCTAT GGCACTAGAA CGAGGCTCAA TAAAATGCTC CACAGGTGGG
  CTTCAAAGGC TTAACATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38242177	NES09557120	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28325749					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38242177	NES09557120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98692063 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kank4	KN motif and ankyrin repeat domains 4			Intron
				Noncoding-Transcript-Variant
Rr595790	regulatory region 595790			1771 bp distal
Rr595791	regulatory region 595791			219 bp proximal
Rr595792	regulatory region 595792			1378 bp proximal