rs28325746 SNP Detail

Summary

• ID
  rs28325746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98692187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCCACCC TACCCAAGGC TCTCATTAAA ATGGGGTCCC
  AAAGCTTTCC AACACTCATG AGTTTTCTTG GTTTAATAGT GAACGCCCTT AACTCTCCTC
  Y
  GGCTTCCTGT GCCTATGGCA CTAGAACGAG GCTCAATAAA ATGCTCCACA GGTGGGCTTC
  AAAGGCTTAA CATGAAACAT TAACACAAGC CCCTCATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38242174	NES09557123	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		C	T	C	C	C	C
ss45712735	mCV23912749	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss147090478	ENSMUSSNP4236181	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28325746					SNP	T	T	T	C	T	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38242174	NES09557123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98692187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kank4	KN motif and ankyrin repeat domains 4			Intron
				Noncoding-Transcript-Variant
Rr595790	regulatory region 595790			1895 bp distal
Rr595791	regulatory region 595791			95 bp proximal
Rr595792	regulatory region 595792			1254 bp proximal