rs28325740 SNP Detail

Summary

• ID
  rs28325740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98692696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTCTAT CCCCTTTCTC
  TCAGAAGATA GAGCTGGTAA GGTTTAGCAG GAAATGGTTA GGAAGGGTCA GGGAGACATG
  GCCTGAATGA GGAAAGGGGT CCTCTGGGCT GTGTGCGGAT TACAAGATGT GCCACTGAAT
  GGGGCTAGAA AGGCCCCACA TGTCTGCTGT GAGTCCAGAT GTCTAGAAGA GATCCTCAGA
  Y
  TCCAGTGACC GACCATAAGG ACTGACCCTG GGGCCACTTC TGATTCAAAC ACCGCTTCAG
  TGTCCTGGCT TTGTACCAGG CCATTCACAA CCTCCCTTAC TTCCCATCCC CCATCCCCCA
  CCCCCTCCAG CCCATGTGCT GTTTCCTCTG CTGACCTGAG TGCGACCACC TCTCCCCCCG
  CCCCCCACTG TTTCCACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38242168	NES09557129	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss321221735	CHEV_4_98471150	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28325740					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38242168	NES09557129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98692696 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kank4	KN motif and ankyrin repeat domains 4			Intron
				Noncoding-Transcript-Variant
Rr595791	regulatory region 595791			within coordinates
Rr595792	regulatory region 595792			745 bp proximal