rs28324489 SNP Detail

Summary

• ID
  rs28324489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79958500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTCAGGT AATTACAAGT CGTGCTTCGA GTCACTGTAC
  ATCCTGTTCT GTATTGTTAA GAACCCGGTC AGTACACTGG AAGCAATTCG CACTTTACTA
  R
  TTAGTGAGGA ATGGAAATTT AATTCCTCAC TAATTTAAAC CAAAGCTCTA ATATGTTTGA
  TATGCTTTTC ATGTTGTTTT GCCACACAAA TAATTTTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss38183120	NES09240825	PERLEGEN	MM_PANEL2	f	SNP		A	A		A		A	G		G
ss45342006	mCV25097159	ABI	CRAMUS_MOUSE	f	SNP	A			G	A
ss146789716	ENSMUSSNP5448410	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				A
ss320362021	CHEV_2_79968313	CHEVERUD	SCREENING_POP	f	SNP						A			A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs28324489					SNP	A	A	A	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38183120	NES09240825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79958500 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11847	CpG island 11847			802 bp proximal
Pde1a	phosphodiesterase 1A, calmodulin-dependent			Intron
				Noncoding-Transcript-Variant
Rr373421	regulatory region 373421			951 bp downstream
Rr560060	regulatory region 560060			1098 bp distal
Rr560061	regulatory region 560061			773 bp proximal
Rr560062	regulatory region 560062			1292 bp proximal
Tssr24917	transcription start site region 24917			784 bp downstream
Tssr24918	transcription start site region 24918			857 bp downstream
Tssr24919	transcription start site region 24919			961 bp downstream
Tssr24920	transcription start site region 24920			1004 bp downstream
Tssr24921	transcription start site region 24921			1027 bp downstream
Tssr24922	transcription start site region 24922			1061 bp downstream
Tssr24923	transcription start site region 24923			1088 bp downstream
Tssr24924	transcription start site region 24924			1134 bp downstream
Tssr24925	transcription start site region 24925			1379 bp downstream