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rs28324485 SNP Detail
Summary
  • ID
    rs28324485
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:79959589 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GCCAAGCAGC TCATCTGCAA CTGTTCCGTG CACAGAAGCA
    CATCAGAATT TCTACAGTTT ACGAGCTCAA TTATGCACGA AAGAAACGTG AATGACTTTC
    R
    CGCTCTACAA GAAGCTGAAT TCCTCTCTAG CAGCTGAAGC AGGGCAGGAT GTAATAAGAA
    ACCAGATGGT AGGAAGCAGT ACCAGCAGCA CCACCCTGGG                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
BALB/cByJ
BTBR T<+> Itpr3/J
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss38183116 NES09240831 PERLEGEN MM_PANEL2 f SNP G G G G A G G G
SNP Consensus Information
SNP Consensus Type
BALB/cByJ
BTBR T<+> Itpr3/J
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs28324485 SNP G G G G A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38183116 NES09240831 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:79959589 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11847 CpG island 11847 within coordinates
Pde1a phosphodiesterase 1A, calmodulin-dependent Intron
mRNA-UTR
Noncoding-Transcript-Variant
Rr560061 regulatory region 560061 within coordinates
Rr560062 regulatory region 560062 203 bp proximal
Tssr24917 transcription start site region 24917 249 bp upstream
Tssr24918 transcription start site region 24918 222 bp upstream
Tssr24919 transcription start site region 24919 107 bp upstream
Tssr24920 transcription start site region 24920 72 bp upstream
Tssr24921 transcription start site region 24921 53 bp upstream
Tssr24922 transcription start site region 24922 2 bp upstream
Tssr24923 transcription start site region 24923 within coordinates
Tssr24924 transcription start site region 24924 45 bp downstream
Tssr24925 transcription start site region 24925 290 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory