GCCAAGCAGC TCATCTGCAA CTGTTCCGTG CACAGAAGCA CATCAGAATT TCTACAGTTT ACGAGCTCAA TTATGCACGA AAGAAACGTG AATGACTTTC R CGCTCTACAA GAAGCTGAAT TCCTCTCTAG CAGCTGAAGC AGGGCAGGAT GTAATAAGAA ACCAGATGGT AGGAAGCAGT ACCAGCAGCA CCACCCTGGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | BALB/cByJ |
BTBR T<+> Itpr3 |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38183116 | NES09240831 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | A | G | G | G |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | BALB/cByJ |
BTBR T<+> Itpr3 |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
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rs28324485 | SNP | G | G | G | G | A | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38183116 | NES09240831 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:79959589 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11847 | CpG island 11847 | within coordinates | ||||||
Pde1a | phosphodiesterase 1A, calmodulin-dependent | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Rr560061 | regulatory region 560061 | within coordinates | ||||||
Rr560062 | regulatory region 560062 | 203 bp proximal | ||||||
Tssr24917 | transcription start site region 24917 | 249 bp upstream | ||||||
Tssr24918 | transcription start site region 24918 | 222 bp upstream | ||||||
Tssr24919 | transcription start site region 24919 | 107 bp upstream | ||||||
Tssr24920 | transcription start site region 24920 | 72 bp upstream | ||||||
Tssr24921 | transcription start site region 24921 | 53 bp upstream | ||||||
Tssr24922 | transcription start site region 24922 | 2 bp upstream | ||||||
Tssr24923 | transcription start site region 24923 | within coordinates | ||||||
Tssr24924 | transcription start site region 24924 | 45 bp downstream | ||||||
Tssr24925 | transcription start site region 24925 | 290 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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