rs28324477 SNP Detail

Summary

• ID
  rs28324477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79960848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTACAAA AATGCCTTCT AATTTATAAA TGAGAGGACA
  TTAACTCAAG CAAGCGTCAG GTTTAATTTT CTCAGAAAAG TTATTTCCTG AACTCAAACA
  R
  GCATAATGTC ATCAGTGTCC AAACACTTCT CTCCACTCAG ACTCACTTCT CTGAGCAGCT
  GTTCGAGTTG TCAAAACATA TTGATAAGGA TACTATTACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38183108	NES09240845	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28324477					SNP	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38183108	NES09240845	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79960848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11847	CpG island 11847	1256 bp distal
Gm13674	predicted gene 13674	1426 bp upstream
Pde1a	phosphodiesterase 1A, calmodulin-dependent	Intron
Rr560061	regulatory region 560061	1075 bp distal
Rr560062	regulatory region 560062	556 bp distal
Tssr24917	transcription start site region 24917	1508 bp upstream
Tssr24918	transcription start site region 24918	1481 bp upstream
Tssr24919	transcription start site region 24919	1366 bp upstream
Tssr24920	transcription start site region 24920	1331 bp upstream
Tssr24921	transcription start site region 24921	1312 bp upstream
Tssr24922	transcription start site region 24922	1261 bp upstream
Tssr24923	transcription start site region 24923	1226 bp upstream
Tssr24924	transcription start site region 24924	1200 bp upstream
Tssr24925	transcription start site region 24925	955 bp upstream