rs28324474 SNP Detail

Summary

• ID
  rs28324474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79961482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGATACAAA AACTGTTCAA TTTTTTCATT AAATGTTTCA
  TAAAATAAAA ACATTAATGA TAAACCAAAT AGAACAGCTC ATTGTTTGAA TCCTTGGCCA
  R
  GACAATTTTC AATCTTGGTA GCAAAATGTT CTGTTAAAGT ACAGAATAGA ACGCATTTCC
  TTAGTTTATA ACTAATCTTG GAGTACAATG ACGATGTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss38183105	NES09240848	PERLEGEN	MM_PANEL2	f	SNP			A	G	G		A	A	A
ss146789808	ENSMUSSNP3739369	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss320362042	CHEV_2_79971295	CHEVERUD	SCREENING_POP	f	SNP						G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs28324474					SNP	A	G	A	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38183105	NES09240848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79961482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11847	CpG island 11847	1890 bp distal
Gm13674	predicted gene 13674	792 bp upstream
Pde1a	phosphodiesterase 1A, calmodulin-dependent	Intron
Rr560061	regulatory region 560061	1709 bp distal
Rr560062	regulatory region 560062	1190 bp distal
Tssr24919	transcription start site region 24919	2000 bp upstream
Tssr24920	transcription start site region 24920	1965 bp upstream
Tssr24921	transcription start site region 24921	1946 bp upstream
Tssr24922	transcription start site region 24922	1895 bp upstream
Tssr24923	transcription start site region 24923	1860 bp upstream
Tssr24924	transcription start site region 24924	1834 bp upstream
Tssr24925	transcription start site region 24925	1589 bp upstream