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rs28324474 SNP Detail
Summary
  • ID
    rs28324474
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:79961482 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TTGATACAAA AACTGTTCAA TTTTTTCATT AAATGTTTCA
    TAAAATAAAA ACATTAATGA TAAACCAAAT AGAACAGCTC ATTGTTTGAA TCCTTGGCCA
    R
    GACAATTTTC AATCTTGGTA GCAAAATGTT CTGTTAAAGT ACAGAATAGA ACGCATTTCC
    TTAGTTTATA ACTAATCTTG GAGTACAATG ACGATGTAA                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
BTBR T<+> Itpr3/J
DBA/2J
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
SM/J
ss38183105 NES09240848 PERLEGEN MM_PANEL2 f SNP A G G A A A
ss146789808 ENSMUSSNP3739369 ENSEMBL ENSEMBL_Sanger f SNP A G G
ss320362042 CHEV_2_79971295 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
BTBR T<+> Itpr3/J
DBA/2J
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
SM/J
rs28324474 SNP A G A G G G A A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38183105 NES09240848 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:79961482 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11847 CpG island 11847 1890 bp distal
Gm13674 predicted gene 13674 792 bp upstream
Pde1a phosphodiesterase 1A, calmodulin-dependent Intron
Rr560061 regulatory region 560061 1709 bp distal
Rr560062 regulatory region 560062 1190 bp distal
Tssr24919 transcription start site region 24919 2000 bp upstream
Tssr24920 transcription start site region 24920 1965 bp upstream
Tssr24921 transcription start site region 24921 1946 bp upstream
Tssr24922 transcription start site region 24922 1895 bp upstream
Tssr24923 transcription start site region 24923 1860 bp upstream
Tssr24924 transcription start site region 24924 1834 bp upstream
Tssr24925 transcription start site region 24925 1589 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory