TTGATACAAA AACTGTTCAA TTTTTTCATT AAATGTTTCA TAAAATAAAA ACATTAATGA TAAACCAAAT AGAACAGCTC ATTGTTTGAA TCCTTGGCCA R GACAATTTTC AATCTTGGTA GCAAAATGTT CTGTTAAAGT ACAGAATAGA ACGCATTTCC TTAGTTTATA ACTAATCTTG GAGTACAATG ACGATGTAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
BTBR T<+> Itpr3 |
DBA/2J |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38183105 | NES09240848 | PERLEGEN | MM_PANEL2 | f | SNP | A | G | G | A | A | A | ||||
ss146789808 | ENSMUSSNP3739369 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | G | G | |||||||
ss320362042 | CHEV_2_79971295 | CHEVERUD | SCREENING_POP | f | SNP | G | G | ||||||||
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
BTBR T<+> Itpr3 |
DBA/2J |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
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rs28324474 | SNP | A | G | A | G | G | G | A | A | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38183105 | NES09240848 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:79961482 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11847 | CpG island 11847 | 1890 bp distal | ||||||
Gm13674 | predicted gene 13674 | 792 bp upstream | ||||||
Pde1a | phosphodiesterase 1A, calmodulin-dependent | Intron | ||||||
Rr560061 | regulatory region 560061 | 1709 bp distal | ||||||
Rr560062 | regulatory region 560062 | 1190 bp distal | ||||||
Tssr24919 | transcription start site region 24919 | 2000 bp upstream | ||||||
Tssr24920 | transcription start site region 24920 | 1965 bp upstream | ||||||
Tssr24921 | transcription start site region 24921 | 1946 bp upstream | ||||||
Tssr24922 | transcription start site region 24922 | 1895 bp upstream | ||||||
Tssr24923 | transcription start site region 24923 | 1860 bp upstream | ||||||
Tssr24924 | transcription start site region 24924 | 1834 bp upstream | ||||||
Tssr24925 | transcription start site region 24925 | 1589 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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