rs28322134 SNP Detail

Summary

• ID
  rs28322134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62538178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCAATGG GCTCTGCAAA
  GTGTGTTCAG AACGCCGCTA CCGGCAGGTG GGTGCTTGAT CCCCTGGGTA CTGTGATAGT
  GGGAATCAGG GATGGGGCTC ATCCATATAG AATCTCTCTC TCCACAAGCC CATCTATGCC
  TCCCCCTGTT CCCTGCAGGC ACATTAGAGA CAGGGGTTGG TCCCATGGCC CAGCCTGCTA
  Y
  CTACTGCCCC GGGTTATAGG CAGCTGAGGC CAGTTCTGAG TGTTTTCCTA TCCACTGCCT
  GGGATCCTTG ATGAGATGAG TTAGCTGTTG CTGCTTGGTT TTTGCTTTTG CTTTTATTAT
  CTAGGAGGAG GTGATTGGAA TAAAAAAAGC GCCATGTCAG GTCTGAGATT AGTGGTGCTG
  GGTTTGGGCT GGGGGGCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38056169	NES09391311	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28322134					SNP	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056169	NES09391311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62538178 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rgs3	regulator of G-protein signaling 3			Intron
				Noncoding-Transcript-Variant
Rr593362	regulatory region 593362			349 bp distal
Rr593363	regulatory region 593363			1911 bp proximal
Tssr37501	transcription start site region 37501			411 bp downstream
Tssr37502	transcription start site region 37502			272 bp downstream
Tssr37503	transcription start site region 37503			222 bp downstream
Tssr37504	transcription start site region 37504			201 bp downstream