rs28322132 SNP Detail

Summary

• ID
  rs28322132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62538543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTAGTG GTGCTGGGTT
  TGGGCTGGGG GGCTAAGGGA CTCCCGAAAG CTGCAGTTTT GCTGACTTTC CTGTTTCTGG
  TGGGCAGCGG TACCCATGAT GTCCCTTGTG TGTACTGGTG TGTGCATCTA GGTGAGGTGT
  GTTGTAAGCG TATGTGTATC TTTTCCTCCC GGCTGCCACC ATTGCCTTGA AGTGACTCCG
  R
  GATTGCTGTG GCTCTGGAGG CCAACTTCAC TGCATCTGTC TCTTAGCTCC TGGGCTGGGA
  GGCAGGGAAG AGTCAGGAGT GATGGTCACG TTCACCCCAA AGACTCTTCT AGAACTAGCT
  TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC
  TTTTTAAGAT TTATTTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38056167	NES09391313	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28322132					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056167	NES09391313	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62538543 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rgs3	regulator of G-protein signaling 3			Intron
				Noncoding-Transcript-Variant
Rr593362	regulatory region 593362			714 bp distal
Rr593363	regulatory region 593363			1546 bp proximal
Tssr37501	transcription start site region 37501			776 bp downstream
Tssr37502	transcription start site region 37502			637 bp downstream
Tssr37503	transcription start site region 37503			587 bp downstream
Tssr37504	transcription start site region 37504			566 bp downstream