rs28322130 SNP Detail

Summary

• ID
  rs28322130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62539209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGAAG AGCACTCAGT
  GCTCTTACCT GCTGAGTCAT CTCACCAGCC CACTTTTATT TCTTATACAT AGGAATGGGG
  ATCAGGAGTA GGGATGAAGG TAAAATATAT CCAGATTTGT GTAGTGTCCA AGATGGAGGG
  ACCACACGAA TTGCCCTGAC TGTAAAAAAT ACAGAGAAGA CCCTCTTTAG AATCTGGAGC
  Y
  TAACTCTATA GTGTATAGGT CACAGGCAGA GGCCCATTTC CCCCCCACCC CCACCCCCCC
  CCCGGCACCT GCCTCCATCA CTGGGGACCC AGATGTTCTT TCTAACATTT TCCTGCACCG
  TTGACCTCAA TCTATGCTCC CTACTTTCCT GAAGTTAGTC CCTGTGGCAA GAACATTTAG
  ATGTTTATAA ACATAAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38056165	NES09391204	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28322130					SNP	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056165	NES09391204	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62539209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rgs3	regulator of G-protein signaling 3			Intron
				Noncoding-Transcript-Variant
Rr593362	regulatory region 593362			1380 bp distal
Rr593363	regulatory region 593363			880 bp proximal
Tssr37501	transcription start site region 37501			1442 bp downstream
Tssr37502	transcription start site region 37502			1303 bp downstream
Tssr37503	transcription start site region 37503			1253 bp downstream
Tssr37504	transcription start site region 37504			1232 bp downstream